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popphylotools.github.io

source for popphylotools GitHub page

Welcome to popphylotools at GitHub

Here you will find tools developed for phylogenetic and population genetic analysis.

HiMAP

Bioinformatic locus selection and data processing pipelines used in Dupuis et al. 2017 (submitted) for generating phylogenomic datasets using the HiMAP approach.

mvMapper

mvMapper is an interactive data exploration tool for multivariate analyses with associated geographic location information.

phylo-fasta-fudger

This tool “fills in” or “fudges” individual-specific missing data in phylogenomic datasets by substituting missing individuals’ data with that of their closest relative (determined from a reference phylogeny). This can facilitate analyses that require no missing data (e.g. using gene trees to estimate a species tree where all gene trees must have the same taxa).


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